Type: object
Description: Definition of a measurement class. Provenance: GA4GH Phenopackets v2 Measurement

Properties

assayCode

• type: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/ontologyTerm.json [LINK]

Class that describes the assay used to produce the measurement. Renamed compared to GA4GH Phenopackets v2 Measurement.assay

assayCode Value Example

{
   "id" : "LOINC:26515-7",
   "label" : "Platelets [#/volume] in Blood"
}

date

• type: string (date)

Date of measurement. Addition compared to Phenopackets model.

measurementValue

• type:

The result of the measurement

notes

• type: string

Unstructured text to describe this measurement. Addition compared to Phenopackets model.

notes Value Example

"Some free text"

observationMoment

• type: ./timeElement.json

Moment in time at which measurement was performed. RECOMMENDED. Renamed compared to GA4GH Phenopackets v2 Measurement.time_observed

observationMoment Value Example

{
   "age" : {
      "iso8601duration" : "P53Y8M"
   }
}

procedure

• type: ./procedure.json

Clinical procedure performed to acquire the sample used for the measurement

procedure Value Example

{
   "code" : {
      "id" : "NCIT:C5189",
      "label" : "Radical Cystoprostatectomy"
   }
}