Type: object
Description: Class describing a clinical procedure or intervention. Provenance: GA4GH Phenopackets v2 Procedure

Properties

ageAtProcedure

• type: ./timeElement.json

Compares to Phenopackets v2 Procedure.performed

bodySite

• type: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/ontologyTerm.json [LINK]

Specific body site where the procedure was performed. Recommended valuee from Uber-anatomy ontology (UBERON)

bodySite Value Examples

{
   "id" : "UBERON:0003403",
   "label" : "Skin of forearm"
}

{
   "id" : "UBERON:0003214",
   "label" : "mammary gland alveolus"
}

dateOfProcedure

• type: string (date)

Date of procedure, in ISO8601 format

dateOfProcedure Value Example

"2010-07-10"

procedureCode

• type: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/ontologyTerm.json [LINK]

Clinical procedure performed with recommended values from Medical Action Ontology (MAXO) ‘Medical action’ term tree (MAXO:0000001). Compares to Phenopackets v2 Procedure.code

procedureCode Value Examples

{
   "id" : "MAXO:0001175",
   "label" : "liver transplantation"
}

{
   "id" : "MAXO:0000136",
   "label" : "high-resolution microendoscopy"
}

{
   "id" : "OBI:0002654",
   "label" : "needle biopsy"
}