Type: object
Description: A single VCF allele. For structural variation the INFO field should contain the relevant information e.g. END=43500;SVTYPE=DUP;CHR2=1;SVLEN=29000; See https://samtools.github.io/hts-specs/VCFv4.3.pdf

Properties

alt

• type: string

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alt Value Example

"G"

chr

• type: string

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chr Value Example

"10"

genomeAssembly

• type: string

Genome assembly the allele was called against. We recommend using the Genome Reference Consortium nomenclature

genomeAssembly Value Examples

"GRCh37"

"GRCh38"

id

• type: string

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id Value Example

"add example"

info

• type: string

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info Value Example

"add example"

pos

• type: integer

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pos Value Example

123256215

ref

• type: string

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ref Value Example

"T"

vcfVersion

• type: string

The value of the VCF spec fileformat field

vcfVersion Value Examples

"VCFv4.1"

"VCFv4.2"

VcfAllele Value Example

{
   "alt" : "G",
   "chr" : "10",
   "genomeAssembly" : "GRCh37",
   "pos" : "123256215",
   "ref" : "T",
   "vcfVersion" : "VCFv4.1"
}