org.schemablocks.legacy | An Initiative by Members of the Global Alliance for Genomics and Health

GA4GH :: SchemaBlocks

An Initiative by Members of the Global Alliance for Genomics and Health

About {S}[B]

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{S}[B] BETA

GA4GH

GA4GH::Discovery

GA4GH::CLP

GA4GH::GKS

Beacon

Phenopackets

VRS

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ELIXIR Beacon

[date ↓] [date ↑] [Z → A]

Schemas

Schema elements previously developed as part of various GA4GH efforts had been assembled in the SchemaBlocks demonstrator. Those schemas and documentation will be re-implemented in this space.

Other relevant links:

blocks repository issues and pull requests
Phenopackets issues
GA4GH::Metadata site

sb-phenopackets VcfAllele [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Variant [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Update [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

TableData sb-discovery-search ↗

{S}[B] Status [i]	playground
Provenance	Discovery Search
Used by	Discovery Search

Table sb-discovery-search ↗

{S}[B] Status [i]	playground
Provenance	Discovery Search
Used by	Discovery Search

search Study [ ↗ ]

{S}[B] Status [i]	proposed
Used by	Super Simple Study Schema

sb-phenopackets SpdiAllele [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

SimpleInterval sb-vr-spec ↗

{S}[B] Status [i]	implemented
Provenance	vr-spec
Used by	vr-spec

sb-phenopackets Resource [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Procedure [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets PhenotypicFeature [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Phenopacket [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Person [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Pedigree [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

search Participant [ ↗ ]

{S}[B] Status [i]	proposed
Used by	Super Simple Study Schema

Pagination sb-discovery-search ↗

{S}[B] Status [i]	playground
Provenance	Discovery Search
Used by	Discovery Search

sb-phenopackets OntologyClass [ ↗ ]

{S}[B] Status [i]	core
Provenance	Original GA4GH schema additional discussions with @cmungall and phenopackets developers Phenopackets alignment
Used by	Phenopackets Progenetix database schema (Beacon+ backend)

search Observation [ ↗ ]

{S}[B] Status [i]	proposed
Used by	Super Simple Study Schema

sb-phenopackets Metadata [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

ListTablesResponse sb-discovery-search ↗

{S}[B] Status [i]	playground
Provenance	Discovery Search
Used by	Discovery Search

sb-phenopackets IscnAllele [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

Interval sb-vr-spec ↗

{S}[B] Status [i]	implemented
Provenance	vr-spec
Used by	vr-spec

sb-phenopackets Individual [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets HtsFile [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets HgvsAllele [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

playground GeoLocation [ ↗ ]

{S}[B] Status [i]	proposed
Provenance	IETF GeoJSON pecification Developer branch of original GA4GH schema Progenetix
Used by	Progenetix database schema (Beacon+ backend)

playground GeoLabels [ ↗ ]

{S}[B] Status [i]	proposed
Provenance	IETF GeoJSON pecification Progenetix `bycon` project
Used by	Progenetix database schema (Beacon+ backend)

playground GeoJSONgeometry [ ↗ ]

{S}[B] Status [i]	proposed
Provenance	Developer branch of original GA4GH schema IETF GeoJSON pecification Progenetix
Used by	Progenetix database schema (Beacon+ backend)

sb-phenopackets Gene [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Family [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets ExternalReference [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Evidence [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Disease [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

DataUseModifier ga4gh ↗

{S}[B] Status [i]	implemented
Provenance	DUO
Used by	DUO

DataUseLimitation ga4gh ↗

{S}[B] Status [i]	implemented
Provenance	DUO
Used by	DUO

Curie sb-vr-spec ↗

{S}[B] Status [i]	implemented
Provenance	vr-spec
Used by	vr-spec

sb-phenopackets Cohort [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

Checksum sb-checksum ↗

{S}[B] Status [i]	proposed
Provenance	GA4GH DRS (`develop` branch)
Used by	GA4GH DRS GA4GH TRS

playground BloodGroup [ ↗ ]

{S}[B] Status [i]	proposed
Provenance	GA4GH Data Connect
Used by	Example schema in Data Connect specification

BlockMeta schemablocks ↗

{S}[B] Status [i]	proposed
Provenance	Original development for SchemaBlocks project
Used by	SchemaBlocks

sb-phenopackets Biosample [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

search Observation [ ↗ ]

{S}[B] Status [i]	proposed
Used by	Super Simple Study Schema

sb-phenopackets AgeRange [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets

sb-phenopackets Age [ ↗ ]

{S}[B] Status [i]	implemented
Provenance	Phenopackets
Used by	Phenopackets